This module picks the amino acid sequences from the PDB file either in three letter code or single letter code based on the users choice. If the SEQRES header is not available in the input PDB file then the sequence information will be taken from the coordinates.
The module calculates the composition, molecular weight and volume of all the amino acids available in the PDB file.
The module changes all the residues as ALA except GLY in the PDB file.
The module removes all the hydrogen atoms present in the PDB file.
The module changes the existing chain id with the users specified chain id.
The module removes user specified range of residues from the given PDB file.
The module removes HETATM(s) present in the PDB file.
The module performs renumbering of residues in the given PDB file.
The module calculates average temperature factor for the given PDB file.
The module changes temperature factor value specified by the user.
The module picks three-dimensional atomic coordinates for the given range of temperature factor.
The module picks three-dimensional atomic coordinates for the given range of temperature factor.
This module displays the minimum and maximum atomic coordinates.
The module converts the orthogonal coordinates into fractional coordinates.
The module calculates bond lengths, bond angles, and torsion angles.
The module changes the existing occupancy value with the user specified value.
, backbone & side chain atomsThe module picks the user specified atoms from the PDB file.
The module applies user supplied rotation matrix and translation vector to the PDB file.
This module extracts the Aminoacid sequences from SEQRES or ATOMIC COORDINATES of the given PDB file and converts it into Fasta format.